bluepyemodel.icselector.modules.gene_selector

Methods for selecting genes associated with a given me- and t-type

Classes

GeneSelector(gene_map)

Selects genes from Yann's gene mapping file.

class GeneSelector(gene_map)

Bases: object

Selects genes from Yann’s gene mapping file.

Parameters:

• gene_map (DataFrame) – Array mapping genes to met-types. Rows have

• met-types

• genes (columns have)

get(gene_name)

Get info for given gene.

Parameters:

gene_name (str) – name of gene

Returns:

gene info

Return type:

(dict)

select_from_ttype(keys=None, group_compartments=False)

Returns selected genes and distributions associated with provided key words.

Parameters:

• keys (list [str]) – List of keywords

• group_compartments – Option to combine compartments into groups

• 'all' ((e.g.)

• 'alldend') (or)

Returns:

list of selected genes with info

Return type:

selected_genes (list [dict])