bluepyemodel.tools.conversion¶
Convert BluePyEModel pickle files to and from HDF5.
Functions
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Convert a BluePyEfe cells HDF5 file back to pickle. |
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Convert a BluePyEfe cells pickle file to HDF5. |
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Convert an optimisation summary HDF5 file back to a pickle checkpoint dict. |
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Convert an optimisation checkpoint pickle file to HDF5. |
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Convert a supported HDF5 file back to pickle. |
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Load an HDF5 optimisation summary and return a checkpoint-compatible dict. |
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Convert a supported pickle file to HDF5, inferring content type when omitted. |
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Convert a BluePyEfe protocols HDF5 file back to pickle. |
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Convert a BluePyEfe protocols pickle file to HDF5. |
- cells_hdf5_to_pickle(hdf5_path, pickle_path)¶
Convert a BluePyEfe cells HDF5 file back to pickle.
- cells_pickle_to_hdf5(pickle_path, hdf5_path)¶
Convert a BluePyEfe cells pickle file to HDF5.
- checkpoint_hdf5_to_pickle(hdf5_path, pickle_path)¶
Convert an optimisation summary HDF5 file back to a pickle checkpoint dict.
- checkpoint_pickle_to_hdf5(pickle_path, hdf5_path, optimizer_override=None)¶
Convert an optimisation checkpoint pickle file to HDF5.
- hdf5_to_pickle(hdf5_path, pickle_path)¶
Convert a supported HDF5 file back to pickle.
- load_checkpoint_hdf5(hdf5_path)¶
Load an HDF5 optimisation summary and return a checkpoint-compatible dict.
- pickle_to_hdf5(pickle_path, hdf5_path, content_type=None, optimizer_override=None)¶
Convert a supported pickle file to HDF5, inferring content type when omitted.
- protocols_hdf5_to_pickle(hdf5_path, pickle_path)¶
Convert a BluePyEfe protocols HDF5 file back to pickle.
- protocols_pickle_to_hdf5(pickle_path, hdf5_path)¶
Convert a BluePyEfe protocols pickle file to HDF5.