bluepyemodel.tools.search_pdfs

Helper functions used to find the path to the pdfs generated during the different steps of the emodel pipeline

Functions

copy_emodel_pdf_dependencies_to_new_path(...)	Copy dependencies to new path using allen notation
copy_emodel_pdf_dependency_to_new_path(...)	Copy a pdf dependency to new path using allen notation
figure_efeatures(emodel, protocol_name, efeature)	Get path to pdf representing the efeature extracted from ephys recordings
figure_emodel_EPSP(emodel_metadata, seed[, ...])	Get path for the pdf representing the EPSP of an emodel
figure_emodel_ISI_CV(emodel_metadata, seed)	Get path for the pdf representing the ISI_CV fit of an emodel
figure_emodel_bAP(emodel_metadata, seed[, ...])	Get path for the pdf representing the bAP of an emodel
figure_emodel_currentscapes(emodel_metadata, ...)	Get path for the pdfs representing the currentscapes of an emodel
figure_emodel_optimisation(emodel_metadata, seed)	Get path for the pdf representing the convergence of the optimisation
figure_emodel_parameters(emodel_metadata[, ...])	Get path for the pdf representing the distribution of the parameters of an emodel
figure_emodel_parameters_evolution(...[, ...])	Get path for the pdf representing the evolution of the parameters of an emodel
figure_emodel_rheobase(emodel_metadata, seed)	Get path for the pdf representing the rheobase fit of an emodel
figure_emodel_score(emodel_metadata, seed[, ...])	Get path for the pdf representing the scores of an emodel
figure_emodel_thumbnail(emodel_metadata, seed)	Get path for the pdf representing the thumbnail of an emodel
figure_emodel_traces(emodel_metadata, seed)	Get path for the pdf representing the traces of an emodel
search_figure_efeatures(emodel, ...)	Search for the pdf representing the efeature extracted from ephys recordings
search_figure_emodel_EPSP(emodel_metadata, seed)	Search for the pdf representing the EPSP of an emodel
search_figure_emodel_ISI_CV(emodel_metadata, ...)	Search for the pdf representing the ISI_CV fit of an emodel
search_figure_emodel_bAP(emodel_metadata, seed)	Search for the pdf representing the bAP of an emodel
search_figure_emodel_currentscapes(...[, ...])	Search for the pdfs representing the currentscapes of an emodel
search_figure_emodel_optimisation(...[, ...])	Search for the pdf representing the convergence of the optimisation
search_figure_emodel_parameters(emodel_metadata)	Search for the pdf representing the distribution of the parameters of an emodel
search_figure_emodel_parameters_evolution(...)	Search for the pdf representing the evolution of the parameters of an emodel
search_figure_emodel_rheobase(...[, ...])	Search for the pdf representing the rheobase fit of an emodel
search_figure_emodel_score(emodel_metadata, seed)	Search for the pdf representing the scores of an emodel
search_figure_emodel_thumbnail(...[, ...])	Search for the pdf representing the thumbnail of an emodel
search_figure_emodel_traces(emodel_metadata, ...)	Search for the pdf representing the traces of an emodel
search_figure_path(pathname)	Search for a single pdf based on an expression
search_figure_paths(pathname)	Search for at least one pdf based on an expression

copy_emodel_pdf_dependencies_to_new_path(old_metadata, new_metadata, old_allen_notation, new_allen_notation, seed, overwrite=False)

Copy dependencies to new path using allen notation

copy_emodel_pdf_dependency_to_new_path(old_path, new_path, overwrite=False)

Copy a pdf dependency to new path using allen notation

figure_efeatures(emodel, protocol_name, efeature)

Get path to pdf representing the efeature extracted from ephys recordings

figure_emodel_EPSP(emodel_metadata, seed, use_allen_notation=True)

Get path for the pdf representing the EPSP of an emodel

figure_emodel_ISI_CV(emodel_metadata, seed, use_allen_notation=True)

Get path for the pdf representing the ISI_CV fit of an emodel

figure_emodel_bAP(emodel_metadata, seed, use_allen_notation=True)

Get path for the pdf representing the bAP of an emodel

figure_emodel_currentscapes(emodel_metadata, seed, use_allen_notation=True)

Get path for the pdfs representing the currentscapes of an emodel

figure_emodel_optimisation(emodel_metadata, seed, use_allen_notation=True)

Get path for the pdf representing the convergence of the optimisation

figure_emodel_parameters(emodel_metadata, seed=None, use_allen_notation=True)

Get path for the pdf representing the distribution of the parameters of an emodel

figure_emodel_parameters_evolution(emodel_metadata, seed=None, use_allen_notation=True)

Get path for the pdf representing the evolution of the parameters of an emodel

figure_emodel_rheobase(emodel_metadata, seed, use_allen_notation=True)

Get path for the pdf representing the rheobase fit of an emodel

figure_emodel_score(emodel_metadata, seed, use_allen_notation=True)

Get path for the pdf representing the scores of an emodel

figure_emodel_thumbnail(emodel_metadata, seed, use_allen_notation=True)

Get path for the pdf representing the thumbnail of an emodel

figure_emodel_traces(emodel_metadata, seed, use_allen_notation=True)

Get path for the pdf representing the traces of an emodel

search_figure_efeatures(emodel, protocol_name, efeature)

Search for the pdf representing the efeature extracted from ephys recordings

search_figure_emodel_EPSP(emodel_metadata, seed, use_allen_notation=True)

Search for the pdf representing the EPSP of an emodel

search_figure_emodel_ISI_CV(emodel_metadata, seed, use_allen_notation=True)

Search for the pdf representing the ISI_CV fit of an emodel

search_figure_emodel_bAP(emodel_metadata, seed, use_allen_notation=True)

Search for the pdf representing the bAP of an emodel

search_figure_emodel_currentscapes(emodel_metadata, seed, use_allen_notation=True)

Search for the pdfs representing the currentscapes of an emodel

search_figure_emodel_optimisation(emodel_metadata, seed, use_allen_notation=True)

Search for the pdf representing the convergence of the optimisation

search_figure_emodel_parameters(emodel_metadata, use_allen_notation=True)

Search for the pdf representing the distribution of the parameters of an emodel

search_figure_emodel_parameters_evolution(emodel_metadata, seed=None, use_allen_notation=True)

Search for the pdf representing the evolution of the parameters of an emodel

search_figure_emodel_rheobase(emodel_metadata, seed, use_allen_notation=True)

Search for the pdf representing the rheobase fit of an emodel

search_figure_emodel_score(emodel_metadata, seed, use_allen_notation=True)

Search for the pdf representing the scores of an emodel

search_figure_emodel_thumbnail(emodel_metadata, seed, use_allen_notation=True)

Search for the pdf representing the thumbnail of an emodel

search_figure_emodel_traces(emodel_metadata, seed, use_allen_notation=True)

Search for the pdf representing the traces of an emodel

search_figure_path(pathname)

Search for a single pdf based on an expression

search_figure_paths(pathname)

Search for at least one pdf based on an expression