bluepyemodel.model.morphology_configuration

Morphology Configuration

Classes

MorphologyConfiguration([name, path, ...])

Morphology configuration
class MorphologyConfiguration(name=None, path=None, format=None, seclist_names=None, secarray_names=None, section_index=None, id=None)

Bases: object

Morphology configuration

Init.

Parameters:

  • name (str) – name of the morphology. If None, the file name from the path will be used.

  • path (str) – path to the morphology file.

  • format (str) – format of the morphology file, as to be ‘asc’ or ‘swc’. If None, the extension of the path will be used.

  • seclist_names (list) – Optional. Names of the lists of sections (e.g: [‘somatic’, …]).

  • secarray_names (list) – Optional. Names of the sections (e.g: [‘soma’, …]).

  • section_index (list) – Optional. Index to a specific section, used for non-somatic recordings.

  • id (str) – Optional. Nexus ID of the morphology.