bluepyemodel.access_point

E-model access_point module

Functions

get_access_point(access_point, emodel, **kwargs)

Returns a DataAccessPoint object.

get_access_point(access_point, emodel, **kwargs)

Returns a DataAccessPoint object.

Parameters:

• access_point (str) – name of the access_point to use, can be ‘nexus’ or ‘local’.

• emodel (str) – name of the emodel.

• kwargs – extra arguments to pass to access_point constructors, see below.

Optional:

• etype (str): name of the electric type.

• ttype (str): name of the transcriptomic type.

• mtype (str): name of the morphology type.

• species (str): name of the species.

• brain_region (str): name of the brain location.

• iteration (str): tag associated to the current run.

• synapse_class (str): synapse class (neurotransmitter).

For local:

• emodel_dir (str): path of the directory containing the parameters,

  features and parameters config files.

• recipe_path (str, optional): path to the file containing the recipes.

• final_path (str, optional): path to the final.json,

  if different from the one in emodel_dir

• legacy_dir_structure (bool, optional): uses legacy folder structure

• with_seed (bool): allows for emodel_seed type of emodel names in final.json

  (not in recipes)

For nexus:

• project (str): name of the Nexus project.

• organisation (str): name of the Nexus organization to which the project belong.

• endpoint (str): Nexus endpoint.

• forge_path (str): path to a .yml used as configuration by nexus-forge.

• forge_ontology_path (str): path to the .yml used to access the ontology in Nexus Forge.

  If not provided, forge_path will be used.

• access_token (str, optional): Nexus connection token.

Returns:

DataAccessPoint

Modules

access_point	DataAccessPoint class.
local	LocalAccessPoint class.